CPD Results

The following document contains the results of PMD's CPD 5.3.5.

Duplications

File Line
edu/columbia/rascal/domain/irb/IrbModification.java 133
edu/columbia/rascal/domain/irb/IrbRenewal.java 350
    @Column(insertable = true, updatable = true, nullable = true, name = "changeAttachments", length = 1)
    private String changeAttachments;

    @Column(insertable = true, updatable = true, nullable = true, name = "changeAttributes", length = 1)
    private String changeAttributes;

    @Column(insertable = true, updatable = true, nullable = true, name = "changeBackground", length = 1)
    private String changeBackground;

    @Column(insertable = true, updatable = true, nullable = true, name = "changeDataSecurity", length = 1)
    private String changeDataSecurity;

    @Column(insertable = true, updatable = true, nullable = true, name = "changeExempt", length = 1)
    private String changeExempt;

    @Column(insertable = true, updatable = true, nullable = true, name = "changeFunding", length = 1)
    private String changeFunding;

    @Column(insertable = true, updatable = true, nullable = true, name = "changeGeneral", length = 1)
    private String changeGeneral;

    @Column(insertable = true, updatable = true, nullable = true, name = "changeInformedConsent", length = 1)
    private String changeInformedConsent;

    @Column(insertable = true, updatable = true, nullable = true, name = "changeLocations", length = 1)
    private String changeLocations;

    @Column(insertable = true, updatable = true, nullable = true, name = "changeNoRevisions", length = 1)
    private String changeNoRevisions;

    @Column(insertable = true, updatable = true, nullable = true, name = "changePersonnel", length = 1)
    private String changePersonnel;

    @Column(insertable = true, updatable = true, nullable = true, name = "changeProcedures", length = 1)
    private String changeProcedures;

    @Column(insertable = true, updatable = true, nullable = true, name = "changeResearch", length = 1)
    private String changeResearch;

    @Column(insertable = true, updatable = true, nullable = true, name = "changeRisksBenefits", length = 1)
    private String changeRisksBenefits;

    @Column(insertable = true, updatable = true, nullable = true, name = "changeSubjects", length = 1)
    private String changeSubjects;

    @Column(insertable = true, updatable = true, nullable = true, name = "enrollmentStatus")
File Line
edu/columbia/rascal/domain/RascalUser.java 61
edu/columbia/rascal/domain/pt/PtAccessControl.java 50
	@Column(
			insertable = true,
			updatable = true,
			name = "addressLine1",
			length = 60
			)
	private String addressLine1;

	@Column(
			insertable = true,
			updatable = true,
			name = "addressLine2",
			length = 60
			)
	private String addressLine2;

	@Column(
			insertable = true,
			updatable = true,
			name = "addressLine3",
			length = 60
			)
	private String addressLine3;

	@Column(
			insertable = true,
			updatable = true,
			name = "addressLine4",
			length = 60
			)
	private String addressLine4;

	@Column(
			insertable = true,
			updatable = true,
			name = "affiliatedInstitution",
			length = 60
			)
	private String affiliatedInstitution;

	@Column(
			insertable = true,
			updatable = true,
			name = "beeperPreferred",
			length = 16
			)
	private String beeperPreferred;

	@Column(
			insertable = true,
			updatable = true,
			name = "cancerCenter",
			length = 1
			)
	private String cancerCenter;

	@Column(
			insertable = true,
			updatable = true,
			name = "city",
			length = 60
			)
	private String city;

	@Column(
			insertable = true,
			updatable = true,
			name = "conflictInterest",
			length = 1
			)
	private String conflictInterest;

	@Column(
			insertable = true,
			updatable = true,
			name = "conflictInterestDate",
			length = 23
			)
	@Temporal(TemporalType.TIMESTAMP)
	private Date conflictInterestDate;

	@Column(
			insertable = true,
			updatable = true,
			name = "country",
			length = 60
			)
	private String country;

	@Column(
			insertable = true,
			updatable = true,
			name = "creation_date",
File Line
edu/columbia/rascal/domain/irb/IrbModification.java 445
edu/columbia/rascal/domain/irb/IrbRenewal.java 1432
    }

    public void setChangeAttachments(String changeAttachments) {
    	this.changeAttachments = changeAttachments;
    }

    public void setChangeAttributes(String changeAttributes) {
    	this.changeAttributes = changeAttributes;
    }

    public void setChangeBackground(String changeBackground) {
    	this.changeBackground = changeBackground;
    }

    public void setChangeDataSecurity(String changeDataSecurity) {
    	this.changeDataSecurity = changeDataSecurity;
    }

    public void setChangeExempt(String changeExempt) {
    	this.changeExempt = changeExempt;
    }

    public void setChangeFunding(String changeFunding) {
    	this.changeFunding = changeFunding;
    }

    public void setChangeGeneral(String changeGeneral) {
    	this.changeGeneral = changeGeneral;
    }

    public void setChangeInformedConsent(String changeInformedConsent) {
    	this.changeInformedConsent = changeInformedConsent;
    }

    public void setChangeLocations(String changeLocations) {
    	this.changeLocations = changeLocations;
    }

    public void setChangeNoRevisions(String changeNoRevisions) {
    	this.changeNoRevisions = changeNoRevisions;
    }

    public void setChangePersonnel(String changePersonnel) {
    	this.changePersonnel = changePersonnel;
    }

    public void setChangeProcedures(String changeProcedures) {
    	this.changeProcedures = changeProcedures;
    }

    public void setChangeResearch(String changeResearch) {
    	this.changeResearch = changeResearch;
    }

    public void setChangeRisksBenefits(String changeRisksBenefits) {
    	this.changeRisksBenefits = changeRisksBenefits;
    }

    public void setChangeSubjects(String changeSubjects) {
    	this.changeSubjects = changeSubjects;
    }

    public void setEnrollmentStatus(Integer enrollmentStatus) {
File Line
edu/columbia/rascal/domain/ic/IacucStaff.java 68
edu/columbia/rascal/domain/irb/IrbStaff.java 52
    @Column(
        insertable = true,
        updatable = true,
        name = "appendixA",
        length = 1
    )
    private String appendixA;

    @Column(
        insertable = true,
        updatable = true,
        name = "appendixB",
        length = 1
    )
    private String appendixB;

    @Column(
        insertable = true,
        updatable = true,
        name = "appendixC",
        length = 1
    )
    private String appendixC;

    @Column(
        insertable = true,
        updatable = true,
        name = "appendixD",
        length = 1
    )
    private String appendixD;

    @Column(
        insertable = true,
        updatable = true,
        name = "appendixE",
        length = 1
    )
    private String appendixE;

    @Column(
        insertable = true,
        updatable = true,
        name = "appendixF",
        length = 1
    )
    private String appendixF;

    @Column(
        insertable = true,
        updatable = true,
        name = "appendixG",
        length = 1
    )
    private String appendixG;

    @Column(
        insertable = true,
        updatable = true,
        name = "appendixH",
        length = 1
    )
    private String appendixH;
    
    @Column(
            insertable = true,
            updatable = true,
            name = "appendixI",
            length = 1
    )
    private String appendixI;
    
    @Column(
        insertable = true,
        updatable = true,
        name = "beeper",
File Line
edu/columbia/rascal/domain/RascalUser.java 1968
edu/columbia/rascal/domain/hipaa/HipaaBusinessObject.java 224
	private String buildFirstLastNameUni(String lastName, String firstName, String uni) {
		String nameUni = "";
		String name = "";

		if (lastName.trim().equals("Name Unknown") || firstName.trim().equals("Name Unknown") ||
				(lastName.trim().equals("") && firstName.trim().equals(""))
				) {
			name = "Name Unknown";
		} else {

			if (!firstName.trim().equals("")) {
				name = firstName.trim();
			} else {
				name = "-";
			}

			if (!lastName.trim().equals("")) {
				name = name + " " + lastName.trim();
			} else {
				name = name + " " + "-";
			}
		}

		if (!uni.trim().equals("")) {
			nameUni = name + " (" + uni.trim() + ")";
		} else {
			nameUni = name + " (-)";
		}

		return nameUni;
	}
File Line
edu/columbia/rascal/domain/irb/IrbClosureAttachment.java 51
edu/columbia/rascal/domain/irb/IrbUnanticipatedAttachment.java 53
    @Column(
        insertable = true,
        updatable = true,
        name = "archive",
        length = 1
    )
    private String archive;

    @Column(
        insertable = true,
        updatable = true,
        name = "contentType",
        length = 90
    )
    private String contentType;

    @Column(
        insertable = true,
        updatable = true,
        name = "dateCreated",
        length = 23
    )
    @Temporal(TemporalType.TIMESTAMP)
    private Date dateCreated;
    @Basic(fetch = FetchType.LAZY)
    @Column(
        insertable = true,
        updatable = false,
        name = "documentData"
    )
    @Lob private Blob documentData;
    
    @Size(
            min = 1,
            max = 60,
       	    message="You must provide a document identifier between 1 and 60 characters in length"
        )
    private String documentIdentifier;

    @Column(
        insertable = true,
        updatable = true,
        name = "fileName"
    )
    @Size(
            min = 1,
            max = 255,
       	    message="You must provide a file name between 1 and 255 characters in length"
        )
    private String fileName;

    @Column(
        insertable = true,
        updatable = true,
        name = "internalFlag",
        length = 1
    )
    private String internalFlag;

    @JoinColumn(
        name = "irbClosureId",
File Line
edu/columbia/rascal/domain/appendix/HzAppendixHeader.java 88
edu/columbia/rascal/domain/irb/IrbProtocolHeader.java 166
    @Column(
        insertable = true,
        updatable = true,
        name = "hazMatChemicalOrToxin",
        length = 1
    )
    private String hazMatChemicalOrToxin;

    @Column(
        insertable = true,
        updatable = true,
        name = "hazMatHumanBloodOrCell",
        length = 1
    )
    private String hazMatHumanBloodOrCell;

    @Column(
        insertable = true,
        updatable = true,
        name = "hazMatInfectiousAgents",
        length = 1
    )
    private String hazMatInfectiousAgents;

    @Column(
        insertable = true,
        updatable = true,
        name = "hazMatLaser",
        length = 1
    )
    private String hazMatLaser;

    @Column(
        insertable = true,
        updatable = true,
        name = "hazMatRadioFrequency",
        length = 1
    )
    private String hazMatRadioFrequency;

    @Column(
        insertable = true,
        updatable = true,
        name = "hazMatRadioIsotopes",
        length = 1
    )
    private String hazMatRadioIsotopes;

    @Column(
        insertable = true,
        updatable = true,
        name = "hazMatRecombinantDNA",
        length = 1
    )
    private String hazMatRecombinantDna;

    @Column(
        insertable = true,
        updatable = true,
        name = "hazMatXray",
        length = 1
    )
    private String hazMatXray;

    @OneToMany(
File Line
edu/columbia/rascal/domain/appendix/HzStaff.java 46
edu/columbia/rascal/domain/ic/IacucStaff.java 68
edu/columbia/rascal/domain/irb/IrbStaff.java 52
    @Column(
        insertable = true,
        updatable = true,
        name = "appendixA",
        length = 1
    )
    private String appendixA;

    @Column(
        insertable = true,
        updatable = true,
        name = "appendixB",
        length = 1
    )
    private String appendixB;

    @Column(
        insertable = true,
        updatable = true,
        name = "appendixC",
        length = 1
    )
    private String appendixC;

    @Column(
        insertable = true,
        updatable = true,
        name = "appendixD",
        length = 1
    )
    private String appendixD;

    @Column(
        insertable = true,
        updatable = true,
        name = "appendixE",
        length = 1
    )
    private String appendixE;

    @Column(
        insertable = true,
        updatable = true,
        name = "appendixF",
        length = 1
    )
    private String appendixF;

    @Column(
            insertable = true,
            updatable = true,
            name = "appendixG",
            length = 1
        )
    private String appendixG;
    
    @Column(
        insertable = true,
        updatable = true,
        name = "cellPhone",
File Line
edu/columbia/rascal/domain/tc/TccourseHeader.java 314
edu/columbia/rascal/domain/tc/TccourseHeader.java 400
        this.title = title;
        this.courseNumber = courseNumber;
        this.administratorRid = administratorRid;
        this.administratorDepartment = administratorDepartment;
        this.creationDate = creationDate;
        this.modificationDate = modificationDate;
        this.passingPercentage = passingPercentage;
        this.mainStudyContentUrl = mainStudyContentUrl;
        this.description = description;
        this.isReleased = isReleased;
        this.displayOnAppendixA = displayOnAppendixA;
        this.displayOnAppendixB = displayOnAppendixB;
        this.displayOnAppendixC = displayOnAppendixC;
        this.displayOnAppendixD = displayOnAppendixD;
        this.displayOnAppendixE = displayOnAppendixE;
        this.displayOnAppendixF = displayOnAppendixF;
        this.displayOnAppendixG = displayOnAppendixG;
        this.displayOnAppendixI = displayOnAppendixI;
        this.displayOnIrbDataSheet = displayOnIrbDataSheet;
        this.displayOnPtDataSheet = displayOnPtDataSheet;
        this.displayOnIacucDataSheet = displayOnIacucDataSheet;
        this.contactRid = contactRid;
        this.abbreviatedTitle = abbreviatedTitle;
        this.testLocation = testLocation;
        this.expiresAfter = expiresAfter;
        this.sequenceNumber = sequenceNumber;
        this.tcuserHeaders = tcuserHeaders;
        this.tcreferences = tcreferences;
        this.tcrequiredCourses = tcrequiredCourses;
        this.tcdivisions = tcdivisions;
        this.passFailTest = passFailTest;
    }
File Line
edu/columbia/rascal/domain/irb/IrbSubjectPopulation.java 124
edu/columbia/rascal/domain/irb/IrbSubjectPopulationActual.java 122
        this.irbProtocolHeader = irbProtocolHeader;
        this.subjectPopulationCode = subjectPopulationCode;
        this.percentage = percentage;
    }

    //~ Methods ------------------------------------------------------------------------------------

    /**
     * TODO: DOCUMENT ME!
     *
     * @return  TODO: DOCUMENT ME!
     */

    public IrbProtocolHeader getIrbProtocolHeader() {
        return this.irbProtocolHeader;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @return  TODO: DOCUMENT ME!
     */
    public Integer getPercentage() {
        return (this.percentage == null) ? Integer.valueOf(0) : this.percentage;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @return  TODO: DOCUMENT ME!
     */
    public Long getSubjectPopulationCode() {
        return (this.subjectPopulationCode == null) ? Long.valueOf(0) : this.subjectPopulationCode;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  irbProtocolHeader  TODO: DOCUMENT ME!
     */
    public void setIrbProtocolHeader(IrbProtocolHeader irbProtocolHeader) {
        this.irbProtocolHeader = irbProtocolHeader;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  percentage  TODO: DOCUMENT ME!
     */
    public void setPercentage(Integer percentage) {
        this.percentage = percentage;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  subjectPopulationCode  TODO: DOCUMENT ME!
     */
    public void setSubjectPopulationCode(Long subjectPopulationCode) {
        this.subjectPopulationCode = subjectPopulationCode;
    }
 
    /**
     * @return the irbClosure
     */
    public IrbClosure getIrbClosure() {
        return irbClosure;
    }

    /**
     * @param irbClosure the irbClosure to set
     */
    public void setIrbClosure(IrbClosure irbClosure) {
        this.irbClosure = irbClosure;
    }

	@Override
	public Long getId() {
		return this.oid;
File Line
edu/columbia/rascal/domain/appendix/AppendixF.java 48
edu/columbia/rascal/domain/appendix/AppendixG.java 48
	@OneToMany(cascade = CascadeType.ALL, fetch = FetchType.LAZY, mappedBy = "appendixF")
	private Set<AppendixIsotope> appendixIsotopes = new HashSet<AppendixIsotope>(
			0);
	@Column(insertable = true, updatable = true, name = "appendixNumber", length = 10)
	private String appendixNumber;
	@Column(insertable = true, updatable = true, name = "authorizationNumber")
	private String authorizationNumber;
	@Column(insertable = true, updatable = true, name = "authorizedPerson")
	private Integer authorizedPerson;
	@Column(insertable = true, updatable = true, name = "contaminationMinimizeSteps")
	private String contaminationMinimizeSteps;
	@Column(insertable = true, updatable = true, name = "createDate", length = 23)
	@Temporal(TemporalType.TIMESTAMP)
	private Date createDate;
	@Column(insertable = true, updatable = true, name = "createdBy")
	private Integer createdBy;
	@Column(insertable = true, updatable = true, name = "excretionRoute")
File Line
edu/columbia/rascal/domain/pt/PtAccessControl.java 399
edu/columbia/rascal/domain/pt/PtAccessControl.java 494
        ) {
        this.ptProposalHeader = ptProposalHeader;
        this.sequenceNumber = sequenceNumber;
        this.type = type;
        this.rascalUser = rascalUser;
        this.creationDate = new Date();
        this.deptHome = deptHome;
        this.emailPreferred = emailPreferred;
        this.nameFirst = nameFirst;
        this.nameLast = nameLast;
        this.nameMiddle2 = nameMiddle2;
        this.nameSuffix = nameSuffix;
        this.phonePreferred = phonePreferred;
        this.ssn = ssn;
        this.subDeptHome = subDeptHome;
        this.userId = userId;
        this.position = position;
        this.addressLine1 = addressLine1;
        this.addressLine2 = addressLine2;
        this.addressLine3 = addressLine3;
        this.addressLine4 = addressLine4;
        this.city = city;
        this.state = state;
        this.postalCode = postalCode;
        this.country = country;
        this.faxPreferred = faxPreferred;
        this.beeperPreferred = beeperPreferred;
        this.affiliatedInstitution = affiliatedInstitution;
        this.homePage = homePage;
        this.conflictInterest = conflictInterest ? "Y" : "N";
File Line
edu/columbia/rascal/domain/appendix/AppendixBPPE.java 90
edu/columbia/rascal/domain/appendix/AppendixCPPE.java 90
    public AppendixBPPE(Long appendixOid, String ppeRelatedTo, RascalAppendixPPE rascalAppendixPPE) {
        this.appendixOid = appendixOid;
        this.ppeRelatedTo = ppeRelatedTo;
    	this.rascalAppendixPPE = rascalAppendixPPE;
    }


    //~ Methods ------------------------------------------------------------------------------------


    /**
     * Property accessors.
     *
     * @return  TODO: DOCUMENT ME!
     */
    public Long getId() {
        return this.oid;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @return  TODO: DOCUMENT ME!
     */

    public RascalAppendixPPE getRascalAppendixPPE() {
        return this.rascalAppendixPPE;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     */
    public void setRascalAppendixPPE(RascalAppendixPPE rascalAppendixPPE) {
        this.rascalAppendixPPE = rascalAppendixPPE;
    }

    /** @see  java.lang.Object#toString() */
    @Override public String toString() {
        return new ToStringBuilder(this).append("oid", oid).append(
                "equipment", rascalAppendixPPE.getEquipment()
                ).toString();
    }
    
	public Long getAppendixOid() {
		return appendixOid;
	}

	public void setAppendixOid(Long appendixOid) {
		this.appendixOid = appendixOid;
	}

	public String getPpeRelatedTo() {
		return ppeRelatedTo;
	}

	public void setPpeRelatedTo(String ppeRelatedTo) {
		this.ppeRelatedTo = ppeRelatedTo;
	}
}
File Line
edu/columbia/rascal/domain/coi/CoiAttachment.java 59
edu/columbia/rascal/domain/coi/CoiJustInTimeAttachment.java 58
    @Column(
        insertable = true,
        updatable = true,
        name = "contentType",
        length = 90
    )
    private String contentType;
    
    @Basic(fetch = FetchType.LAZY)
    @Column(
        insertable = true,
        updatable = false,
        name = "documentData"
    )
    @Lob private Blob documentData;

    @NotNull
    @Size(
        min = 1,
        max = 60,
   	    message="You must provide a document identifier between 1 and 60 characters in length"
    )
    private String documentIdentifier;
    @Column(
        insertable = true,
        updatable = true,
        name = "fileName"
    )
    @Size(
        min = 1,
        max = 255,
   	    message="You must provide a file name between 1 and 255 characters in length"
    )
    private String fileName;

    @Column(
        insertable = true,
        updatable = true,
        name = "id",
        unique = true,
        nullable = false,
        precision = 24,
        scale = 0
    )
    @GeneratedValue(
        strategy = GenerationType.SEQUENCE,
        generator = "CoiAttachment_SEQUENCE"
File Line
edu/columbia/rascal/domain/ic/IacucStaff.java 673
edu/columbia/rascal/domain/irb/IrbStaff.java 791
                return getAppendixI();
            }
            
            default: {
                return true;
            }
        }
    }
    
    public void setHandleHazmat(String appendixType, boolean value) {
        if(appendixType == null) throw new IllegalArgumentException();
        
        switch (appendixType.charAt(0)) {
            case 'A': {
                setAppendixA(value ? "Y" : "N");
                break;
            }
            case 'B': {
                setAppendixB(value ? "Y" : "N");
                break;
            }
            case 'C': {
                setAppendixC(value ? "Y" : "N");
                break;
            }
            case 'D': {
                setAppendixD(value ? "Y" : "N");
                break;
            }
            case 'E': {
                setAppendixE(value ? "Y" : "N");
                break;
            }
            case 'F': {
                setAppendixF(value ? "Y" : "N");
                break;
            }
            case 'G': {
                setAppendixG(value ? "Y" : "N");
                break;
            }
            case 'H': {// do nothing
File Line
edu/columbia/rascal/domain/QRascalUser.java 23
edu/columbia/rascal/domain/pt/QPtAccessControl.java 25
    public final QAbstractPersistable _super = new QAbstractPersistable(this);

    public final StringPath addressLine1 = createString("addressLine1");

    public final StringPath addressLine2 = createString("addressLine2");

    public final StringPath addressLine3 = createString("addressLine3");

    public final StringPath addressLine4 = createString("addressLine4");

    public final StringPath affiliatedInstitution = createString("affiliatedInstitution");

    public final StringPath beeperPreferred = createString("beeperPreferred");

    public final StringPath cancerCenter = createString("cancerCenter");

    public final StringPath city = createString("city");

    public final StringPath conflictInterest = createString("conflictInterest");

    public final DateTimePath<java.util.Date> conflictInterestDate = createDateTime("conflictInterestDate", java.util.Date.class);

    public final StringPath country = createString("country");

    public final DateTimePath<java.util.Date> creationDate = createDateTime("creationDate", java.util.Date.class);

    public final DateTimePath<java.util.Date> dateOfHire = createDateTime("dateOfHire", java.util.Date.class);
File Line
edu/columbia/rascal/domain/appendix/AppendixF.java 356
edu/columbia/rascal/domain/appendix/AppendixG.java 367
	public String getSurvivalTime() {
		return this.survivalTime;
	}

	/**
	 * TODO: DOCUMENT ME!
	 * 
	 * @return TODO: DOCUMENT ME!
	 */
	/** @see edu.columbia.rascal.domain.appendix.AbstractAppendix#getTitle() */

	@Override
	public String getTitle() {
		return this.title;
	}

	/** @see edu.columbia.rascal.domain.appendix.AbstractAppendix#infoGetAppendixLetter() */
	/** @see edu.columbia.rascal.domain.appendix.AbstractAppendix#infoGetAppendixLetter() */
	@Override
	public String infoGetAppendixLetter() {
		return "F";
	}

	/**
	 * TODO: DOCUMENT ME!
	 * 
	 * @param appendixIsotopes
	 *            TODO: DOCUMENT ME!
	 */
	public void setAppendixIsotopes(Set<AppendixIsotope> appendixIsotopes) {
		this.appendixIsotopes = appendixIsotopes;
	}

	/**
	 * TODO: DOCUMENT ME!
	 * 
	 * @param appendixNumber
	 *            TODO: DOCUMENT ME!
	 */
	/**
	 * @see edu.columbia.rascal.domain.appendix.AbstractAppendix#setAppendixNumber(java.lang.String)
	 */
	@Override
	public void setAppendixNumber(String appendixNumber) {
		this.appendixNumber = appendixNumber;
	}

	/**
	 * TODO: DOCUMENT ME!
	 * 
	 * @param authorizationNumber
	 *            TODO: DOCUMENT ME!
	 */
	public void setAuthorizationNumber(String authorizationNumber) {
		this.authorizationNumber = authorizationNumber;
	}

	/**
	 * TODO: DOCUMENT ME!
	 * 
	 * @param authorizedPerson
	 *            TODO: DOCUMENT ME!
	 */
	public void setAuthorizedPerson(Integer authorizedPerson) {
		this.authorizedPerson = authorizedPerson;
	}

	/**
	 * TODO: DOCUMENT ME!
	 * 
	 * @param contaminationMinimizeSteps
	 *            TODO: DOCUMENT ME!
	 */
	public void setContaminationMinimizeSteps(String contaminationMinimizeSteps) {
		this.contaminationMinimizeSteps = contaminationMinimizeSteps;
	}

	/**
	 * TODO: DOCUMENT ME!
	 * 
	 * @param createDate
	 *            TODO: DOCUMENT ME!
	 */
	/** @see edu.columbia.rascal.domain.appendix.AbstractAppendix#setCreateDate(java.util.Date) */
	@Override
	public void setCreateDate(Date createDate) {
		this.createDate = createDate;
	}

	/**
	 * TODO: DOCUMENT ME!
	 * 
	 * @param createdBy
	 *            TODO: DOCUMENT ME!
	 */
	/**
	 * @see edu.columbia.rascal.domain.appendix.AbstractAppendix#setCreatedBy(java.lang.Integer)
	 */
	@Override
	public void setCreatedBy(Integer createdBy) {
		this.createdBy = createdBy;
	}

	/**
	 * TODO: DOCUMENT ME!
	 * 
	 * @param excretionRoute
	 *            TODO: DOCUMENT ME!
	 */
	public void setExcretionRoute(String excretionRoute) {
File Line
edu/columbia/rascal/domain/irb/IrbModification.java 310
edu/columbia/rascal/domain/irb/IrbRenewal.java 945
    }

    public String getChangeAttachments() {
    	return changeAttachments;
    }

    public String getChangeAttributes() {
    	return changeAttributes;
    }

    public String getChangeBackground() {
    	return changeBackground;
    }

    public String getChangeDataSecurity() {
    	return changeDataSecurity;
    }

    public String getChangeExempt() {
    	return changeExempt;
    }

    public String getChangeFunding() {
    	return changeFunding;
    }

    public String getChangeGeneral() {
    	return changeGeneral;
    }

    public String getChangeInformedConsent() {
    	return changeInformedConsent;
    }

    public String getChangeLocations() {
    	return changeLocations;
    }

    public String getChangeNoRevisions() {
    	return changeNoRevisions;
    }

    public String getChangePersonnel() {
    	return changePersonnel;
    }

    public String getChangeProcedures() {
    	return changeProcedures;
    }

    public String getChangeResearch() {
    	return changeResearch;
    }

    public String getChangeRisksBenefits() {
    	return changeRisksBenefits;
    }

    public String getChangeSubjects() {
    	return changeSubjects;
    }

    public Integer getEnrollmentStatus() {
File Line
edu/columbia/rascal/domain/appendix/AppendixB.java 49
edu/columbia/rascal/domain/appendix/AppendixC.java 45
	@Column(insertable = true, updatable = true, name = "confirmStaff", length = 1)
	private String confirmStaff;
	@Column(insertable = true, updatable = true, name = "createDate", length = 23)
	@Temporal(TemporalType.TIMESTAMP)
	private Date createDate;
	@Column(insertable = true, updatable = true, name = "createdBy")
	private Integer createdBy;
	@Column(insertable = true, updatable = true, name = "disinfectant")
	private String disinfectant;
	@Column(insertable = true, updatable = true, name = "disinfectantNonrecommend")
	private String disinfectantNonrecommend;
	@Column(insertable = true, updatable = true, name = "engineeringControls")
	private String engineeringControls;
	@Column(insertable = true, updatable = true, name = "largestVolumeCultures", length = 1)
File Line
edu/columbia/rascal/domain/hipaa/HipaaHeaderFormQuestion.java 432
edu/columbia/rascal/domain/hipaa/HipaaQuestionLookup.java 375
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  notQuestion  TODO: DOCUMENT ME!
     */
    public void setNotQuestion(boolean notQuestion) {

        if (notQuestion)
            this.notQuestion = "Y";
        else
            this.notQuestion = "N";
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  parentQuestionOid  TODO: DOCUMENT ME!
     */
    public void setParentQuestionOid(Long parentQuestionOid) {
        this.parentQuestionOid = parentQuestionOid;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  questionEditable  TODO: DOCUMENT ME!
     */
    public void setQuestionEditable(boolean questionEditable) {

        if (questionEditable)
            this.questionEditable = "Y";
        else
            this.questionEditable = "N";
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  questionPrompt  TODO: DOCUMENT ME!
     */
    public void setQuestionPrompt(String questionPrompt) {
        this.questionPrompt = questionPrompt;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  questionText  TODO: DOCUMENT ME!
     */
    public void setQuestionText(String questionText) {
        this.questionText = questionText;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  sequenceNo  TODO: DOCUMENT ME!
     */
    public void setSequenceNo(Integer sequenceNo) {
        this.sequenceNo = sequenceNo;
    }
    
	@Override
	public Long getId() {
		return this.oid;
	}

	@Override
	protected void setId(Long oid) {
		this.oid = oid;
		
	}
}
File Line
edu/columbia/rascal/domain/hipaa/HipaaHeader.java 646
edu/columbia/rascal/domain/irb/IrbProtocol.java 268
        id = getId().intValue();

        String numberString = "000" + Long.valueOf(id).toString();
        numberString = numberString.substring(numberString.length() - 4,
                numberString.length()
                );

        char charPart[] = new char[4];
        int letterPart = id / 10000;
        charPart[3] = getLetters()[letterPart % 26];
        charPart[2] = getLetters()[(letterPart / 26) % 26];
        charPart[1] = getLetters()[(letterPart / (26 * 26)) % 26];
        charPart[0] = getLetters()[(letterPart / (26 * 26 * 26)) % 26];
File Line
edu/columbia/rascal/domain/appendix/QHzAttachment.java 31
edu/columbia/rascal/domain/coi/QCoiAttachment.java 29
edu/columbia/rascal/domain/coi/QCoiJustInTimeAttachment.java 29
    public final StringPath contentType = createString("contentType");

    public final edu.columbia.rascal.domain.QRascalUser createdBy;

    //inherited
    public final DateTimePath<java.util.Date> createdDate = _super.createdDate;

    public final SimplePath<java.sql.Blob> documentData = createSimple("documentData", java.sql.Blob.class);

    public final StringPath documentIdentifier = createString("documentIdentifier");

    public final StringPath fileName = createString("fileName");

    public final NumberPath<Long> id = createNumber("id", Long.class);

    public final edu.columbia.rascal.domain.QRascalUser lastModifiedBy;

    //inherited
    public final DateTimePath<java.util.Date> lastModifiedDate = _super.lastModifiedDate;

    //inherited
    public final NumberPath<Integer> version = _super.version;

    public QHzAttachment(String variable) {
File Line
edu/columbia/rascal/domain/irb/QIrbModification.java 27
edu/columbia/rascal/domain/irb/QIrbRenewal.java 33
    public final StringPath administrativeChangesOnly = createString("administrativeChangesOnly");

    public final StringPath changeAttachments = createString("changeAttachments");

    public final StringPath changeAttributes = createString("changeAttributes");

    public final StringPath changeBackground = createString("changeBackground");

    public final StringPath changeDataSecurity = createString("changeDataSecurity");

    public final StringPath changeExempt = createString("changeExempt");

    public final StringPath changeFunding = createString("changeFunding");

    public final StringPath changeGeneral = createString("changeGeneral");

    public final StringPath changeInformedConsent = createString("changeInformedConsent");

    public final StringPath changeLocations = createString("changeLocations");

    public final StringPath changeNoRevisions = createString("changeNoRevisions");

    public final StringPath changePersonnel = createString("changePersonnel");

    public final StringPath changeProcedures = createString("changeProcedures");

    public final StringPath changeResearch = createString("changeResearch");

    public final StringPath changeRisksBenefits = createString("changeRisksBenefits");

    public final StringPath changeSubjects = createString("changeSubjects");
File Line
edu/columbia/rascal/domain/ic/IacucStaff.java 924
edu/columbia/rascal/domain/irb/IrbStaff.java 586
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  appendixA  TODO: DOCUMENT ME!
     */
    public void setAppendixA(String appendixA) {
        this.appendixA = appendixA;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  appendixB  TODO: DOCUMENT ME!
     */
    public void setAppendixB(String appendixB) {
        this.appendixB = appendixB;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  appendixC  TODO: DOCUMENT ME!
     */
    public void setAppendixC(String appendixC) {
        this.appendixC = appendixC;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  appendixD  TODO: DOCUMENT ME!
     */
    public void setAppendixD(String appendixD) {
        this.appendixD = appendixD;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  appendixE  TODO: DOCUMENT ME!
     */
    public void setAppendixE(String appendixE) {
        this.appendixE = appendixE;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  appendixF  TODO: DOCUMENT ME!
     */
    public void setAppendixF(String appendixF) {
        this.appendixF = appendixF;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  appendixG  TODO: DOCUMENT ME!
     */
    public void setAppendixG(String appendixG) {
        this.appendixG = appendixG;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  appendixH  TODO: DOCUMENT ME!
     */
    public void setAppendixH(String appendixH) {
        this.appendixH = appendixH;
    }

    public void setAppendixI(String appendixI) {
        this.appendixI = appendixI;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  beeper  TODO: DOCUMENT ME!
     */
    public void setBeeper(String beeper) {
File Line
edu/columbia/rascal/domain/RascalUser.java 612
edu/columbia/rascal/domain/RascalUser.java 2009
		String name = "";

		if (lastName.trim().equals("Name Unknown") || firstName.trim().equals("Name Unknown") ||
				(lastName.trim().equals("") && firstName.trim().equals(""))
				) {
			name = "Name Unknown";
		} else {

			if (!lastName.trim().equals("")) {
				name = lastName.trim();
			} else {
				name = "-";
			}

			if (!firstName.trim().equals("")) {
				name = name + ", " + firstName.trim();
			} else {
				name = name + ", " + "-";
			}
		}
File Line
edu/columbia/rascal/domain/RascalUser.java 1935
edu/columbia/rascal/domain/RascalUser.java 1970
edu/columbia/rascal/domain/hipaa/HipaaBusinessObject.java 227
		String name = "";

		if (lastName.trim().equals("Name Unknown") || firstName.trim().equals("Name Unknown") ||
				(lastName.trim().equals("") && firstName.trim().equals(""))
				) {
			name = "Name Unknown";
		} else {

			if (!firstName.trim().equals("")) {
				name = firstName.trim();
			} else {
				name = "-";
			}

			if (!lastName.trim().equals("")) {
				name = name + " " + lastName.trim();
			} else {
				name = name + " " + "-";
			}
		}
File Line
edu/columbia/rascal/domain/irb/QIrbAdverseEventAttachment.java 23
edu/columbia/rascal/domain/irb/QIrbClosureAttachment.java 23
edu/columbia/rascal/domain/irb/QIrbUnanticipatedAttachment.java 23
    public static final QIrbAdverseEventAttachment irbAdverseEventAttachment = new QIrbAdverseEventAttachment("irbAdverseEventAttachment");

    public final edu.columbia.rascal.domain.QAbstractPersistable _super = new edu.columbia.rascal.domain.QAbstractPersistable(this);

    public final StringPath archive = createString("archive");

    public final StringPath contentType = createString("contentType");

    public final DateTimePath<java.util.Date> dateCreated = createDateTime("dateCreated", java.util.Date.class);

    public final SimplePath<java.sql.Blob> documentData = createSimple("documentData", java.sql.Blob.class);

    public final StringPath documentIdentifier = createString("documentIdentifier");

    public final StringPath fileName = createString("fileName");

    public final StringPath internalFlag = createString("internalFlag");

    public final QIrbAdverseEvent irbAdverseEvent;
File Line
edu/columbia/rascal/domain/appendix/AppendixF.java 467
edu/columbia/rascal/domain/appendix/AppendixG.java 468
	}

	/**
	 * TODO: DOCUMENT ME!
	 * 
	 * @param isIsotopeExcreted
	 *            TODO: DOCUMENT ME!
	 */
	public void setIsIsotopeExcreted(String isIsotopeExcreted) {
		this.isIsotopeExcreted = isIsotopeExcreted;
	}

	/**
	 * TODO: DOCUMENT ME!
	 * 
	 * @param isotopeExcretion
	 *            TODO: DOCUMENT ME!
	 */
	public void setIsotopeExcretion(String isotopeExcretion) {
		this.isotopeExcretion = isotopeExcretion;
	}

	/**
	 * TODO: DOCUMENT ME!
	 * 
	 * @param locked
	 *            TODO: DOCUMENT ME!
	 */
	/** @see edu.columbia.rascal.domain.appendix.AbstractAppendix#setLocked(java.lang.String) */
	@Override
	public void setLocked(String locked) {
		this.locked = locked;
	}

	/**
	 * TODO: DOCUMENT ME!
	 * 
	 * @param numberOfSubjects
	 *            TODO: DOCUMENT ME!
	 */
	public void setNumberOfSubjects(Integer numberOfSubjects) {
		this.numberOfSubjects = numberOfSubjects;
	}

	/**
	 * TODO: DOCUMENT ME!
	 * 
	 * @param subjectDisposure
	 *            TODO: DOCUMENT ME!
	 */
	public void setSubjectDisposure(String subjectDisposure) {
		this.subjectDisposure = subjectDisposure;
	}

	/**
	 * TODO: DOCUMENT ME!
	 * 
	 * @param subjectReturn
	 *            TODO: DOCUMENT ME!
	 */
	public void setSubjectReturn(String subjectReturn) {
		this.subjectReturn = subjectReturn;
	}

	/**
	 * TODO: DOCUMENT ME!
	 * 
	 * @param subjectReturnPrecautions
	 *            TODO: DOCUMENT ME!
	 */
	public void setSubjectReturnPrecautions(String subjectReturnPrecautions) {
		this.subjectReturnPrecautions = subjectReturnPrecautions;
	}

	/**
	 * TODO: DOCUMENT ME!
	 * 
	 * @param subjectSpecies
	 *            TODO: DOCUMENT ME!
	 */
	/**
	 * @see edu.columbia.rascal.domain.appendix.AbstractAppendix#setSubjectSpecies(java.lang.String)
	 */
	@Override
	public void setSubjectSpecies(String subjectSpecies) {
		this.subjectSpecies = subjectSpecies;
	}

	/**
	 * TODO: DOCUMENT ME!
	 * 
	 * @param survivalTime
	 *            TODO: DOCUMENT ME!
	 */
	public void setSurvivalTime(String survivalTime) {
File Line
edu/columbia/rascal/domain/appendix/QAppendixF.java 21
edu/columbia/rascal/domain/appendix/QAppendixG.java 21
    public static final QAppendixF appendixF = new QAppendixF("appendixF");

    public final SetPath<AppendixIsotope, QAppendixIsotope> appendixIsotopes = this.<AppendixIsotope, QAppendixIsotope>createSet("appendixIsotopes", AppendixIsotope.class, QAppendixIsotope.class, PathInits.DIRECT2);

    public final StringPath appendixNumber = createString("appendixNumber");

    public final StringPath authorizationNumber = createString("authorizationNumber");

    public final NumberPath<Integer> authorizedPerson = createNumber("authorizedPerson", Integer.class);

    public final StringPath contaminationMinimizeSteps = createString("contaminationMinimizeSteps");

    public final DateTimePath<java.util.Date> createDate = createDateTime("createDate", java.util.Date.class);

    public final NumberPath<Integer> createdBy = createNumber("createdBy", Integer.class);

    public final StringPath excretionRoute = createString("excretionRoute");
File Line
edu/columbia/rascal/domain/irb/IrbClosureAttachment.java 187
edu/columbia/rascal/domain/irb/IrbUnanticipatedAttachment.java 205
    }
//~ Methods ------------------------------------------------------------------------------------

    /**
     * TODO: DOCUMENT ME!
     *
     * @return  TODO: DOCUMENT ME!
     */
    public String getArchive() {
        return (this.archive == null) ? "N" : this.archive;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @return  TODO: DOCUMENT ME!
     */
    public String getContentType() {
        return (this.contentType == null) ? "" : this.contentType;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @return  TODO: DOCUMENT ME!
     */
    public Date getDateCreated() {
        return this.dateCreated;
    }


    /**
     * TODO: DOCUMENT ME!
     *
     * @return  TODO: DOCUMENT ME!
     */
    public String getDocumentIdentifier() {
        return (this.documentIdentifier == null) ? "" : this.documentIdentifier;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @return  TODO: DOCUMENT ME!
     */
    public String getFileName() {
        return (this.fileName == null) ? "" : this.fileName;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @return  TODO: DOCUMENT ME!
     */
    public String getInternalFlag() {
        return (this.internalFlag == null) ? "N" : this.internalFlag;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @return  TODO: DOCUMENT ME!
     */
    public IrbClosure getIrbClosure() {
File Line
edu/columbia/rascal/domain/RascalUser.java 1692
edu/columbia/rascal/domain/pt/PtAccessControl.java 1231
	}

	/**
	 * TODO: DOCUMENT ME!
	 *
	 * @param  nameFirst  TODO: DOCUMENT ME!
	 */
	public void setNameFirst(String nameFirst) {
		this.nameFirst = nameFirst;
	}

	/**
	 * TODO: DOCUMENT ME!
	 *
	 * @param  nameLast  TODO: DOCUMENT ME!
	 */
	public void setNameLast(String nameLast) {
		this.nameLast = nameLast;
	}

	/**
	 * TODO: DOCUMENT ME!
	 *
	 * @param  nameMiddle1  TODO: DOCUMENT ME!
	 */
	public void setNameMiddle1(String nameMiddle1) {
		this.nameMiddle1 = nameMiddle1;
	}

	/**
	 * TODO: DOCUMENT ME!
	 *
	 * @param  nameMiddle2  TODO: DOCUMENT ME!
	 */
	public void setNameMiddle2(String nameMiddle2) {
		this.nameMiddle2 = nameMiddle2;
	}

	/**
	 * TODO: DOCUMENT ME!
	 *
	 * @param  nameSuffix  TODO: DOCUMENT ME!
	 */
	public void setNameSuffix(String nameSuffix) {
		this.nameSuffix = nameSuffix;
	}

	/**
	 * TODO: DOCUMENT ME!
	 *
	 * @param  phonePreferred  TODO: DOCUMENT ME!
	 */
	public void setPhonePreferred(String phonePreferred) {
		this.phonePreferred = phonePreferred;
	}

	/**
	 * TODO: DOCUMENT ME!
	 *
	 * @param  position  TODO: DOCUMENT ME!
	 */
	public void setPosition(String position) {
		this.position = position;
	}

	/**
	 * TODO: DOCUMENT ME!
	 *
	 * @param  postalCode  TODO: DOCUMENT ME!
	 */
	public void setPostalCode(String postalCode) {
		this.postalCode = postalCode;
	}

	/**
	 * TODO: DOCUMENT ME!
	 *
	 * @param  ruAuthorizedDepartments  TODO: DOCUMENT ME!
	 */
	public void setRuAuthorizedDepartments(Set<RuAuthorizedDepartment> ruAuthorizedDepartments) {
File Line
edu/columbia/rascal/domain/appendix/HzAppendixHeader.java 537
edu/columbia/rascal/domain/irb/IrbProtocolHeader.java 2736
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  hazMatChemicalOrToxin  TODO: DOCUMENT ME!
     */
    public void setHazMatChemicalOrToxin(String hazMatChemicalOrToxin) {
        this.hazMatChemicalOrToxin = hazMatChemicalOrToxin;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  hazMatHumanBloodOrCell  TODO: DOCUMENT ME!
     */
    public void setHazMatHumanBloodOrCell(String hazMatHumanBloodOrCell) {
        this.hazMatHumanBloodOrCell = hazMatHumanBloodOrCell;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  hazMatInfectiousAgents  TODO: DOCUMENT ME!
     */
    public void setHazMatInfectiousAgents(String hazMatInfectiousAgents) {
        this.hazMatInfectiousAgents = hazMatInfectiousAgents;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  hazMatLaser  TODO: DOCUMENT ME!
     */
    public void setHazMatLaser(String hazMatLaser) {
        this.hazMatLaser = hazMatLaser;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  hazMatRadioFrequency  TODO: DOCUMENT ME!
     */
    public void setHazMatRadioFrequency(String hazMatRadioFrequency) {
        this.hazMatRadioFrequency = hazMatRadioFrequency;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  hazMatRadioIsotopes  TODO: DOCUMENT ME!
     */
    public void setHazMatRadioIsotopes(String hazMatRadioIsotopes) {
        this.hazMatRadioIsotopes = hazMatRadioIsotopes;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  hazMatRecombinantDna  TODO: DOCUMENT ME!
     */
    public void setHazMatRecombinantDna(String hazMatRecombinantDna) {
        this.hazMatRecombinantDna = hazMatRecombinantDna;
    }


    /**
     * TODO: DOCUMENT ME!
     *
     * @param  hazMatXray  TODO: DOCUMENT ME!
     */
    public void setHazMatXray(String hazMatXray) {
        this.hazMatXray = hazMatXray;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  hzCorrespondences  TODO: DOCUMENT ME!
     */
    public void setHzCorrespondences(Set<HzCorrespondence> hzCorrespondences) {
File Line
edu/columbia/rascal/domain/irb/QIrbAdverseEventAttachment.java 23
edu/columbia/rascal/domain/irb/QIrbClosureAttachment.java 23
edu/columbia/rascal/domain/irb/QIrbUnanticipatedAttachment.java 23
edu/columbia/rascal/domain/pt/QPtAttachDocuments.java 23
    public static final QIrbAdverseEventAttachment irbAdverseEventAttachment = new QIrbAdverseEventAttachment("irbAdverseEventAttachment");

    public final edu.columbia.rascal.domain.QAbstractPersistable _super = new edu.columbia.rascal.domain.QAbstractPersistable(this);

    public final StringPath archive = createString("archive");

    public final StringPath contentType = createString("contentType");

    public final DateTimePath<java.util.Date> dateCreated = createDateTime("dateCreated", java.util.Date.class);

    public final SimplePath<java.sql.Blob> documentData = createSimple("documentData", java.sql.Blob.class);

    public final StringPath documentIdentifier = createString("documentIdentifier");

    public final StringPath fileName = createString("fileName");

    public final StringPath internalFlag = createString("internalFlag");
File Line
edu/columbia/rascal/domain/hipaa/HipaaHeaderFormQuestion.java 104
edu/columbia/rascal/domain/hipaa/HipaaQuestionLookup.java 99
    )
    @Id private Long oid;
    @Column(
        insertable = true,
        updatable = true,
        name = "parentQuestionOid",
        precision = 24,
        scale = 0
    )
    private Long parentQuestionOid;
    @Column(
        insertable = true,
        updatable = true,
        name = "questionEditable",
        length = 1
    )
    private String questionEditable;
    @Column(
        insertable = true,
        updatable = true,
        name = "questionPrompt"
    )
    private String questionPrompt;
    @Column(
        insertable = true,
        updatable = true,
        name = "questionText"
    )
    private String questionText;
    @Column(
        insertable = true,
        updatable = true,
        name = "sequenceNo"
    )
    private Integer sequenceNo;

    //~ Constructors -------------------------------------------------------------------------------

    /** Constructors * default constructor. */
    public HipaaHeaderFormQuestion() { }
File Line
edu/columbia/rascal/domain/coi/QCoiAttachment.java 68
edu/columbia/rascal/domain/coi/QCoiNotes.java 62
    public QCoiAttachment(Class<? extends CoiAttachment> type, PathMetadata<?> metadata, PathInits inits) {
        super(type, metadata, inits);
        this.coiDisclosure = inits.isInitialized("coiDisclosure") ? new QCoiDisclosure(forProperty("coiDisclosure"), inits.get("coiDisclosure")) : null;
        this.createdBy = inits.isInitialized("createdBy") ? new edu.columbia.rascal.domain.QRascalUser(forProperty("createdBy")) : null;
        this.lastModifiedBy = inits.isInitialized("lastModifiedBy") ? new edu.columbia.rascal.domain.QRascalUser(forProperty("lastModifiedBy")) : null;
    }

}
File Line
edu/columbia/rascal/domain/irb/QIrbBiologicalSpecimen.java 96
edu/columbia/rascal/domain/irb/QIrbDrug.java 110
    public QIrbBiologicalSpecimen(Class<? extends IrbBiologicalSpecimen> type, PathMetadata<?> metadata, PathInits inits) {
        super(type, metadata, inits);
        this.createdBy = inits.isInitialized("createdBy") ? new edu.columbia.rascal.domain.QRascalUser(forProperty("createdBy")) : null;
        this.irbProtocolHeader = inits.isInitialized("irbProtocolHeader") ? new QIrbProtocolHeader(forProperty("irbProtocolHeader"), inits.get("irbProtocolHeader")) : null;
        this.lastModifiedBy = inits.isInitialized("lastModifiedBy") ? new edu.columbia.rascal.domain.QRascalUser(forProperty("lastModifiedBy")) : null;
    }

}
File Line
edu/columbia/rascal/domain/irb/IrbAgendaHeader.java 270
edu/columbia/rascal/domain/pt/PtProposalHeader.java 3817
            String firstXDigits = agendaId.substring(0, agendaId.length() - 4);

            highPart += (alphabet.indexOf(new Character(firstXDigits.charAt(3))));
            highPart += (alphabet.indexOf(new Character(firstXDigits.charAt(2))) * 26);
            highPart += (alphabet.indexOf(new Character(firstXDigits.charAt(1))) * 26 * 26);
            highPart += (alphabet.indexOf(new Character(firstXDigits.charAt(0))) * 26 * 26 * 26);

            return Long.valueOf(highPart + lastFourDigits);

        }

        return null;
    }
File Line
edu/columbia/rascal/domain/tc/TccourseHeader.java 297
edu/columbia/rascal/domain/tc/TccourseHeader.java 383
    public TccourseHeader(String title, String courseNumber, Integer administratorRid,
                          String administratorDepartment, Date creationDate, Date modificationDate,
                          Integer passingPercentage, String mainStudyContentUrl, String description,
                          String isReleased, String displayOnAppendixA,
                          String displayOnAppendixB,String displayOnAppendixC,
                          String displayOnAppendixD,
                          String displayOnAppendixE,
                          String displayOnAppendixF,
                          String displayOnAppendixG,
                          String displayOnAppendixI,
                          String displayOnIrbDataSheet,
                          String displayOnPtDataSheet, String displayOnIacucDataSheet,
                          Integer contactRid, String abbreviatedTitle,
                          Integer testLocation, Integer expiresAfter, Integer sequenceNumber,
                          Set<TcuserHeader> tcuserHeaders, Set<Tcreference> tcreferences,
                          Set<TcrequiredCourse> tcrequiredCourses, Set<Tcdivision> tcdivisions, String passFailTest
    ) {
        this.title = title;
File Line
edu/columbia/rascal/domain/hipaa/HipaaNotes.java 45
edu/columbia/rascal/domain/irb/IrbNotes.java 46
    @Column(
        insertable = true,
        updatable = true,
        name = "authorRid"
    )
    private Integer authorRid;
    @Column(
        insertable = true,
        updatable = true,
        name = "creationDate",
        length = 23
    )
    @Temporal(TemporalType.TIMESTAMP)
    private Date creationDate;
    @Column(
        insertable = true,
        updatable = true,
        name = "note"
    )
    private String note;

    // Fields
    @Column(
        insertable = true,
        updatable = true,
        name = "oid",
        unique = true,
        nullable = false,
        precision = 24,
        scale = 0
    )
    @GeneratedValue(
        strategy = GenerationType.SEQUENCE, generator="HipaaNotes_SEQUENCE"
File Line
edu/columbia/rascal/domain/pt/PtAgencyAddress.java 284
edu/columbia/rascal/domain/pt/PtBudget.java 320
    protected PtAgencyAddress() { }

    //~ Methods ------------------------------------------------------------------------------------

    /**
     * TODO: DOCUMENT ME!
     *
     * @return  TODO: DOCUMENT ME!
     */
    public String getAddressLine1() {

        if (this.addressLine1 == null) return "";

        return this.addressLine1;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @return  TODO: DOCUMENT ME!
     */
    public String getAddressLine2() {

        if (this.addressLine2 == null) return "";

        return this.addressLine2;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @return  TODO: DOCUMENT ME!
     */
    public String getAddressLine3() {

        if (this.addressLine3 == null) return "";

        return this.addressLine3;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @return  TODO: DOCUMENT ME!
     */
    public String getAgencyName() {

        if (this.agencyName == null) return "";

        return this.agencyName;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @return  TODO: DOCUMENT ME!
     */
    public String getCity() {

        if (this.city == null) return "";

        return this.city;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @return  TODO: DOCUMENT ME!
     */
    public String getCode() {
File Line
edu/columbia/rascal/domain/coi/QCoiAttachment.java 68
edu/columbia/rascal/domain/coi/QCoiCorrespondence.java 72
edu/columbia/rascal/domain/coi/QCoiNotes.java 62
    public QCoiAttachment(Class<? extends CoiAttachment> type, PathMetadata<?> metadata, PathInits inits) {
        super(type, metadata, inits);
        this.coiDisclosure = inits.isInitialized("coiDisclosure") ? new QCoiDisclosure(forProperty("coiDisclosure"), inits.get("coiDisclosure")) : null;
        this.createdBy = inits.isInitialized("createdBy") ? new edu.columbia.rascal.domain.QRascalUser(forProperty("createdBy")) : null;
        this.lastModifiedBy = inits.isInitialized("lastModifiedBy") ? new edu.columbia.rascal.domain.QRascalUser(forProperty("lastModifiedBy")) : null;
File Line
edu/columbia/rascal/domain/hipaa/HipaaHeader.java 211
edu/columbia/rascal/domain/irb/IrbAgendaHeader.java 270
edu/columbia/rascal/domain/pt/PtProposalHeader.java 3817
                        hipaaNumber.length() - 4
                        );

                highPart += (alphabet.indexOf(
                            new Character(firstXDigits.charAt(3))
                            ));
                highPart += (alphabet.indexOf(
                            new Character(firstXDigits.charAt(2))
                            ) * 26);
                highPart += (alphabet.indexOf(
                            new Character(firstXDigits.charAt(1))
                            ) * 26 * 26);
                highPart += (alphabet.indexOf(
                            new Character(firstXDigits.charAt(0))
                            ) * 26 * 26 * 26);

                return Long.valueOf(highPart + lastFourDigits);

            }
File Line
edu/columbia/rascal/domain/irb/IrbAdverseEventAttachment.java 51
edu/columbia/rascal/domain/irb/IrbClosureAttachment.java 51
edu/columbia/rascal/domain/irb/IrbUnanticipatedAttachment.java 53
    @Column(
        insertable = true,
        updatable = true,
        name = "archive",
        length = 1
    )
    private String archive;
    @Column(
        insertable = true,
        updatable = true,
        name = "contentType",
        length = 90
    )
    private String contentType;
    @Column(
        insertable = true,
        updatable = true,
        name = "dateCreated",
        length = 23
    )
    @Temporal(TemporalType.TIMESTAMP)
    private Date dateCreated;
    @Basic(fetch = FetchType.LAZY)
    @Column(
        insertable = true,
        updatable = false,
        name = "documentData"
    )
    @Lob private Blob documentData;
    @NotNull
File Line
edu/columbia/rascal/domain/irb/IrbAdverseEventAttachment.java 182
edu/columbia/rascal/domain/irb/IrbUnanticipatedAttachment.java 193
                public int compare(IrbAdverseEventAttachment a1, IrbAdverseEventAttachment a2) {

                    if (a1.getDateCreated().equals(a2.getDateCreated()))
                        return 0;
                    else if (a1.getDateCreated().before(a2.getDateCreated()))
                        return -1;
                    else
                        return 1;
                }

            };

    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @return  TODO: DOCUMENT ME!
     */
    public String getArchive() {
        return (this.archive == null) ? "N" : this.archive;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @return  TODO: DOCUMENT ME!
     */
    public String getContentType() {
        return (this.contentType == null) ? "" : this.contentType;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @return  TODO: DOCUMENT ME!
     */
    public Date getDateCreated() {
        return this.dateCreated;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @return  TODO: DOCUMENT ME!
     */
    public Blob getBlob() {
File Line
edu/columbia/rascal/domain/irb/IrbDevice.java 263
edu/columbia/rascal/domain/irb/IrbDrug.java 234
	}

	public String getManufacturerAddress() {
		return this.manufacturerAddress;
	}

	public void setManufacturerAddress(String manufacturerAddress) {
		this.manufacturerAddress = manufacturerAddress;
	}

	public String getManufacturerContact() {
		return this.manufacturerContact;
	}

	public void setManufacturerContact(String manufacturerContact) {
		this.manufacturerContact = manufacturerContact;
	}

	public String getManufacturerName() {
		return this.manufacturerName;
	}

	public void setManufacturerName(String manufacturerName) {
		this.manufacturerName = manufacturerName;
	}

	public String getName() {
		return this.name;
	}

	public void setName(String name) {
		this.name = name;
	}

	public String getNonFdaApprovedPlans() {
File Line
edu/columbia/rascal/domain/appendix/HzStaff.java 447
edu/columbia/rascal/domain/ic/IacucStaff.java 924
edu/columbia/rascal/domain/irb/IrbStaff.java 586
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  appendixA  TODO: DOCUMENT ME!
     */
    public void setAppendixA(String appendixA) {
        this.appendixA = appendixA;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  appendixB  TODO: DOCUMENT ME!
     */
    public void setAppendixB(String appendixB) {
        this.appendixB = appendixB;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  appendixC  TODO: DOCUMENT ME!
     */
    public void setAppendixC(String appendixC) {
        this.appendixC = appendixC;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  appendixD  TODO: DOCUMENT ME!
     */
    public void setAppendixD(String appendixD) {
        this.appendixD = appendixD;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  appendixE  TODO: DOCUMENT ME!
     */
    public void setAppendixE(String appendixE) {
        this.appendixE = appendixE;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  appendixF  TODO: DOCUMENT ME!
     */
    public void setAppendixF(String appendixF) {
        this.appendixF = appendixF;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  appendixG  TODO: DOCUMENT ME!
     */
    public void setAppendixG(String appendixG) {
        this.appendixG = appendixG;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  cellPhone  TODO: DOCUMENT ME!
     */
    public void setCellPhone(String cellPhone) {
File Line
edu/columbia/rascal/domain/hipaa/HipaaNotes.java 193
edu/columbia/rascal/domain/irb/IrbNotes.java 205
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  authorRid  TODO: DOCUMENT ME!
     */
    public void setAuthorRid(Integer authorRid) {
        this.authorRid = authorRid;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  creationDate  TODO: DOCUMENT ME!
     */
    public void setCreationDate(Date creationDate) {
        this.creationDate = creationDate;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  note  TODO: DOCUMENT ME!
     */
    public void setNote(String note) {
        this.note = note;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  parentObjectName  TODO: DOCUMENT ME!
     */
    public void setParentObjectName(String parentObjectName) {
        this.parentObjectName = parentObjectName;
    }

    /**
     * TODO: DOCUMENT ME!
     *
     * @param  parentObjectOid  TODO: DOCUMENT ME!
     */
    public void setParentObjectOid(Long parentObjectOid) {
        this.parentObjectOid = parentObjectOid;
    }
    
	@Override
	public Long getId() {
		return this.oid;
	}

	@Override
	protected void setId(Long oid) {
		this.oid = oid;
		
	}
}
File Line
edu/columbia/rascal/domain/irb/IrbCorrespondence.java 86
edu/columbia/rascal/domain/pt/PtCorrespondence.java 80
    @Column(
        insertable = true,
        updatable = true,
        name = "meetingDate",
        length = 23
    )
    @Temporal(TemporalType.TIMESTAMP)
    private Date meetingDate;
    @Column(
        insertable = true,
        updatable = true,
        name = "notificationDate",
        length = 23
    )
    @Temporal(TemporalType.TIMESTAMP)
    private Date notificationDate;

    // Fields


    @Column(
        insertable = true,
        updatable = true,
        name = "oid",
        unique = true,
        nullable = false,
        precision = 24,
        scale = 0
    )
    @GeneratedValue(
        strategy = GenerationType.SEQUENCE, generator="IrbCorrespondence_SEQUENCE"
File Line
edu/columbia/rascal/domain/irb/IrbModification.java 517
edu/columbia/rascal/domain/irb/IrbRenewal.java 1540
    }



    
    
    
    
	@Override
	public Long getId() {
		return this.oid;
	}

	@Override
	protected void setId(Long oid) {
		this.oid = oid;
		
	}
    public String getIsDeviationViolation() {
		return isDeviationViolation;
	}

	public void setIsDeviationViolation(String isDeviationViolation) {
		this.isDeviationViolation = isDeviationViolation;
	}

	public Integer getDeviationCount() {
		return deviationCount;
	}

	public void setDeviationCount(Integer deviationCount) {
		this.deviationCount = deviationCount;
	}

	public Integer getViolationCount() {
		return violationCount;
	}

	public void setViolationCount(Integer violationCount) {
		this.violationCount = violationCount;
	}

}